holypipette
latest
User manual
Manipulators
Pressure control
Amplifiers
Automatic patch clamp
Developer guide
holypipette package
holypipette
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
Z
A
abort_if_requested() (holypipette.controller.base.TaskController method)
abort_task() (holypipette.gui.camera.CameraGui method)
(holypipette.interface.base.TaskInterface method)
absolute_move() (holypipette.devices.manipulator.fakemanipulator.FakeManipulator method)
(holypipette.devices.manipulator.leica.Leica method)
(holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.devices.manipulator.proscan.Prior method)
absolute_move_group() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
(holypipette.devices.manipulator.proscan.Prior method)
acquire() (holypipette.devices.amplifier.multiclamp.MultiClamp method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
(holypipette.utils.filelock.BaseFileLock method)
add_config_gui() (holypipette.gui.camera.CameraGui method)
all_devices (holypipette.devices.amplifier.multiclamp.MultiClampChannel attribute)
Amplifier (class in holypipette.devices.amplifier.amplifier)
analyze_calibration() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
auto_bridge_balance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
auto_exposure() (holypipette.interface.camera.CameraInterface method)
auto_fast_compensation() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
auto_pipette_offset() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
auto_recalibrate() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
auto_slow_compensation() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
autocenter() (holypipette.controller.paramecium_device.ParameciumDeviceController method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
autofocus() (holypipette.controller.paramecium_droplet.ParameciumDropletController method)
(holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
autofocus_paramecium() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
autofocus_size (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
autofocus_sleep (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
automatic_experiment() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
AutoPatcher (class in holypipette.controller.patch)
AutopatchError
AutoPatchInterface (class in holypipette.interface.patch)
B
BaseFileLock (class in holypipette.utils.filelock)
blocking_command() (in module holypipette.interface.base)
blur_size (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
break_in() (holypipette.controller.patch.AutoPatcher method)
(holypipette.interface.patch.AutoPatchInterface method)
C
calculate_up_directions() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
calibrate() (holypipette.devices.manipulator.calibratedunit.CalibratedStage method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
calibrate2() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
calibrate_manipulator() (holypipette.interface.pipettes.PipetteInterface method)
calibrate_manipulator2() (holypipette.interface.pipettes.PipetteInterface method)
calibrate_stage() (holypipette.interface.pipettes.PipetteInterface method)
CalibratedStage (class in holypipette.devices.manipulator.calibratedunit)
CalibratedUnit (class in holypipette.devices.manipulator.calibratedunit)
CalibratedUnitProxy (class in holypipette.interface.paramecium_device)
(class in holypipette.interface.paramecium_droplet)
calibration_level (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
CalibrationError
camera_reset_signal (holypipette.gui.camera.CameraGui attribute)
camera_signal (holypipette.gui.camera.CameraGui attribute)
CameraGui (class in holypipette.gui.camera)
CameraInterface (class in holypipette.interface.camera)
categories (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
(holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
(holypipette.interface.patch.PatchConfig attribute)
cell_distance (holypipette.interface.patch.PatchConfig attribute)
cell_R_increase (holypipette.interface.patch.PatchConfig attribute)
check_error() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
check_for_abort() (in module holypipette.controller.base)
check_ranges() (holypipette.interface.pipettes.PipetteInterface method)
clean_pipette() (holypipette.controller.patch.AutoPatcher method)
(holypipette.interface.patch.AutoPatchInterface method)
clear() (holypipette.vision.paramecium_tracking.ParameciumTracker method)
close() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
(holypipette.gui.camera.CameraGui method)
close_signal (holypipette.gui.camera.KeyboardHelpWindow attribute)
(holypipette.gui.camera.LogViewerWindow attribute)
closeEvent() (holypipette.gui.camera.CameraGui method)
(holypipette.gui.camera.KeyboardHelpWindow method)
(holypipette.gui.camera.LogViewerWindow method)
columnCount() (holypipette.gui.camera.Logger method)
command() (in module holypipette.interface.base)
command_received() (holypipette.interface.base.TaskInterface method)
Config (class in holypipette.config)
ConfigGui (class in holypipette.gui.camera)
configuration_keypress() (holypipette.gui.camera.CameraGui method)
configure_board() (holypipette.devices.amplifier.multiclamp.MultiClamp method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
connect() (holypipette.interface.base.TaskInterface method)
(holypipette.interface.camera.CameraInterface method)
(holypipette.interface.pipettes.PipetteInterface method)
console_logger() (in module holypipette.log_utils)
contact_detection() (holypipette.controller.paramecium_droplet.ParameciumDropletController method)
(holypipette.controller.patch.AutoPatcher method)
(holypipette.interface.patch.AutoPatchInterface method)
CRC_16() (holypipette.devices.serialdevice.SerialDevice method)
create_painter() (in module holypipette.gui.paramecium_droplet)
crop_cardinal() (in module holypipette.vision.crop)
crop_center() (in module holypipette.vision.crop)
current_autopatcher (holypipette.interface.patch.AutoPatchInterface property)
current_clamp() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
D
data() (holypipette.gui.camera.Logger method)
debug() (holypipette.log_utils.LoggingObject method)
decrease_exposure() (holypipette.interface.camera.CameraInterface method)
delete_state() (holypipette.controller.base.TaskController method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
detect_contact() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
directory_clicked() (holypipette.gui.camera.RecordingDialog method)
display_changed_value() (holypipette.gui.camera.ConfigGui method)
display_edit() (holypipette.gui.camera.CameraGui method)
display_manipulator() (holypipette.gui.manipulator.ManipulatorGui method)
display_pressure() (holypipette.gui.patch.PatchGui method)
display_timer() (holypipette.gui.manipulator.ManipulatorGui method)
display_z_manipulator() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
dll_path (holypipette.devices.amplifier.multiclamp.MultiClampChannel attribute)
draw_contour() (in module holypipette.gui.paramecium_droplet)
draw_contours (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
draw_cross() (holypipette.gui.camera.CameraGui method)
draw_ellipse() (in module holypipette.gui.paramecium_droplet)
draw_fitted_ellipses (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
draw_scale_bar() (holypipette.gui.manipulator.ManipulatorGui method)
E
electrophysiological_parameters() (holypipette.controller.paramecium_device.ParameciumDeviceController method)
ElidedLabel (class in holypipette.gui.camera)
emit() (holypipette.gui.camera.Logger method)
(holypipette.gui.camera.LogNotifyHandler method)
equalize_matrix() (holypipette.devices.manipulator.calibratedunit.CalibratedStage method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
error() (holypipette.log_utils.LoggingObject method)
error_status() (holypipette.gui.camera.CameraGui method)
establish_connection() (holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
exception() (holypipette.log_utils.LoggingObject method)
execute() (holypipette.interface.base.TaskInterface method)
exit() (holypipette.gui.camera.CameraGui method)
F
FakeAmplifier (class in holypipette.devices.amplifier.amplifier)
FakeManipulator (class in holypipette.devices.manipulator.fakemanipulator)
FakePressureController (class in holypipette.devices.pressurecontroller.pressurecontroller)
fast_speed() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
FileLock (in module holypipette.utils.filelock)
find_amplifiers() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
focus() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
(holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
focus_calibration_level() (holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
focus_working_level() (holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
from_dict() (holypipette.config.Config method)
from_file() (holypipette.config.Config method)
from_points() (holypipette.geometry.planes.Plane static method)
G
get_bridge_resistance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_fast_compensation_capacitance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_meter_value() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_pressure() (holypipette.devices.pressurecontroller.pressurecontroller.FakePressureController method)
(holypipette.devices.pressurecontroller.pressurecontroller.PressureController method)
get_primary_signal() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_primary_signal_gain() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_pulses_amplitude() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_pulses_frequency() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_secondary_signal() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_secondary_signal_gain() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
get_slow_compensation_capacitance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
gigaseal_R (holypipette.interface.patch.PatchConfig attribute)
go_to_floor() (holypipette.interface.pipettes.PipetteInterface method)
go_to_zero() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
H
has_saved_state() (holypipette.controller.base.TaskController method)
has_stopped() (holypipette.vision.paramecium_tracking.ParameciumTracker method)
headerData() (holypipette.gui.camera.Logger method)
help_keypress() (holypipette.gui.camera.CameraGui method)
holypipette
module
holypipette.config
module
holypipette.controller
module
holypipette.controller.base
module
holypipette.controller.paramecium_device
module
holypipette.controller.paramecium_droplet
module
holypipette.controller.patch
module
holypipette.devices.amplifier
module
holypipette.devices.amplifier.amplifier
module
holypipette.devices.amplifier.multiclamp
module
holypipette.devices.manipulator
module
holypipette.devices.manipulator.calibratedunit
module
holypipette.devices.manipulator.fakemanipulator
module
holypipette.devices.manipulator.leica
module
holypipette.devices.manipulator.luigsneumann_SM10
module
holypipette.devices.manipulator.luigsneumann_SM5
module
holypipette.devices.manipulator.manipulator
module
holypipette.devices.manipulator.manipulatorunit
module
holypipette.devices.manipulator.microscope
module
holypipette.devices.manipulator.proscan
module
holypipette.devices.pressurecontroller
module
holypipette.devices.pressurecontroller.ob1
module
holypipette.devices.pressurecontroller.pressurecontroller
module
holypipette.devices.serialdevice
module
holypipette.geometry
module
holypipette.geometry.planes
module
holypipette.gui
module
holypipette.gui.camera
module
holypipette.gui.livefeed
module
holypipette.gui.manipulator
module
holypipette.gui.movingList
module
holypipette.gui.paramecium_device
module
holypipette.gui.paramecium_device2
module
holypipette.gui.paramecium_droplet
module
holypipette.gui.patch
module
holypipette.interface
module
holypipette.interface.base
module
holypipette.interface.camera
module
holypipette.interface.paramecium_device
module
holypipette.interface.paramecium_droplet
module
holypipette.interface.patch
module
holypipette.interface.pipettes
module
holypipette.log_utils
module
holypipette.utils
module
holypipette.utils.filelock
module
holypipette.vision
module
holypipette.vision.crop
module
holypipette.vision.findpipette
module
holypipette.vision.paramecium_tracking
module
holypipette.vision.phase_cross_correlation
module
holypipette.vision.templatematching
module
home() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
home_abort() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
home_return() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
I
image_edit() (holypipette.gui.camera.CameraGui method)
impalement_level (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
impalement_step (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
increase_exposure() (holypipette.interface.camera.CameraInterface method)
info() (holypipette.log_utils.LoggingObject method)
initialize() (holypipette.gui.camera.CameraGui method)
is_accessible() (holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
is_locked (holypipette.utils.filelock.BaseFileLock property)
K
KeyboardHelpWindow (class in holypipette.gui.camera)
keyPressEvent() (holypipette.gui.camera.CameraGui method)
(holypipette.gui.camera.KeyboardHelpWindow method)
L
Leica (class in holypipette.devices.manipulator.leica)
levels (holypipette.gui.camera.LogViewerWindow attribute)
LiveFeedQt (class in holypipette.gui.livefeed)
load_config() (holypipette.gui.camera.ConfigGui method)
load_configuration() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.interface.pipettes.PipetteInterface method)
load_data() (in module holypipette.controller.paramecium_device)
locate() (holypipette.vision.paramecium_tracking.ParameciumTracker method)
locate_pipette() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
lock_file (holypipette.utils.filelock.BaseFileLock property)
(holypipette.utils.filelock.Timeout attribute)
log_keypress() (holypipette.gui.camera.CameraGui method)
log_signal (holypipette.gui.camera.CameraGui attribute)
Logger (class in holypipette.gui.camera)
logger (holypipette.log_utils.LoggingObject property)
LoggingObject (class in holypipette.log_utils)
LogNotifyHandler (class in holypipette.gui.camera)
LogViewerWindow (class in holypipette.gui.camera)
LuigsNeumann_SM10 (class in holypipette.devices.manipulator.luigsneumann_SM10)
LuigsNeumann_SM5 (class in holypipette.devices.manipulator.luigsneumann_SM5)
M
magnitude (holypipette.config.NumberWithUnit attribute)
Manipulator (class in holypipette.devices.manipulator.manipulator)
manipulator_switched (holypipette.interface.pipettes.PipetteInterface attribute)
ManipulatorError
ManipulatorGui (class in holypipette.gui.manipulator)
ManipulatorUnit (class in holypipette.devices.manipulator.manipulatorunit)
manual_calibration() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
MatchingError
max_cell_R (holypipette.interface.patch.PatchConfig attribute)
max_displacement (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
max_distance (holypipette.interface.patch.PatchConfig attribute)
max_gradient (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
max_length (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
max_R (holypipette.interface.patch.PatchConfig attribute)
max_R_increase (holypipette.interface.patch.PatchConfig attribute)
max_width (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
measure() (holypipette.devices.pressurecontroller.ob1.OB1 method)
(holypipette.devices.pressurecontroller.pressurecontroller.FakePressureController method)
(holypipette.devices.pressurecontroller.pressurecontroller.PressureController method)
measure_ranges() (holypipette.gui.manipulator.ManipulatorGui method)
(holypipette.interface.pipettes.PipetteInterface method)
median_position() (holypipette.vision.paramecium_tracking.ParameciumTracker method)
memory_edited() (holypipette.gui.camera.RecordingDialog method)
microdroplet_making() (holypipette.controller.paramecium_droplet.ParameciumDropletController method)
Microscope (class in holypipette.devices.manipulator.microscope)
min_gradient (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
min_length (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
min_R (holypipette.interface.patch.PatchConfig attribute)
min_width (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
minimum_contour (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
minimum_stop_time (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
minimumSizeHint() (holypipette.gui.camera.ElidedLabel method)
module
holypipette
holypipette.config
holypipette.controller
holypipette.controller.base
holypipette.controller.paramecium_device
holypipette.controller.paramecium_droplet
holypipette.controller.patch
holypipette.devices.amplifier
holypipette.devices.amplifier.amplifier
holypipette.devices.amplifier.multiclamp
holypipette.devices.manipulator
holypipette.devices.manipulator.calibratedunit
holypipette.devices.manipulator.fakemanipulator
holypipette.devices.manipulator.leica
holypipette.devices.manipulator.luigsneumann_SM10
holypipette.devices.manipulator.luigsneumann_SM5
holypipette.devices.manipulator.manipulator
holypipette.devices.manipulator.manipulatorunit
holypipette.devices.manipulator.microscope
holypipette.devices.manipulator.proscan
holypipette.devices.pressurecontroller
holypipette.devices.pressurecontroller.ob1
holypipette.devices.pressurecontroller.pressurecontroller
holypipette.devices.serialdevice
holypipette.geometry
holypipette.geometry.planes
holypipette.gui
holypipette.gui.camera
holypipette.gui.livefeed
holypipette.gui.manipulator
holypipette.gui.movingList
holypipette.gui.paramecium_device
holypipette.gui.paramecium_device2
holypipette.gui.paramecium_droplet
holypipette.gui.patch
holypipette.interface
holypipette.interface.base
holypipette.interface.camera
holypipette.interface.paramecium_device
holypipette.interface.paramecium_droplet
holypipette.interface.patch
holypipette.interface.pipettes
holypipette.log_utils
holypipette.utils
holypipette.utils.filelock
holypipette.vision
holypipette.vision.crop
holypipette.vision.findpipette
holypipette.vision.paramecium_tracking
holypipette.vision.phase_cross_correlation
holypipette.vision.templatematching
mosaic() (holypipette.devices.manipulator.calibratedunit.CalibratedStage method)
motor_ranges() (holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
mousePressEvent() (holypipette.gui.livefeed.LiveFeedQt method)
move_and_track() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
move_back() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
move_microscope() (holypipette.interface.pipettes.PipetteInterface method)
move_new_pipette_back() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
move_pipette() (holypipette.interface.pipettes.PipetteInterface method)
move_pipette_down() (holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
(holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
move_pipette_floor() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
move_pipette_in() (holypipette.controller.paramecium_device.ParameciumDeviceController method)
(holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
move_pipette_until_drop() (holypipette.controller.paramecium_device.ParameciumDeviceController method)
(holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
move_pipette_working_level() (holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
(holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
move_pipette_x() (holypipette.interface.pipettes.PipetteInterface method)
move_pipette_y() (holypipette.interface.pipettes.PipetteInterface method)
move_pipette_z() (holypipette.interface.pipettes.PipetteInterface method)
move_pipettes_paramecium() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
move_stage() (holypipette.interface.pipettes.PipetteInterface method)
move_stage_horizontal() (holypipette.interface.pipettes.PipetteInterface method)
move_stage_vertical() (holypipette.interface.pipettes.PipetteInterface method)
MultiClamp (class in holypipette.devices.amplifier.multiclamp)
MultiClampChannel (class in holypipette.devices.amplifier.multiclamp)
N
name (holypipette.config.Config attribute)
(holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
(holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
(holypipette.interface.patch.PatchConfig attribute)
normalize_axis() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
null_current() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
NumberWithUnit (class in holypipette.config)
O
OB1 (class in holypipette.devices.pressurecontroller.ob1)
oscilloscope_filename (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
P
parallel_plane() (holypipette.geometry.planes.Plane method)
paramecium_command_signal (holypipette.gui.paramecium_device.ParameciumDeviceGui attribute)
(holypipette.gui.paramecium_droplet.ParameciumDropletGui attribute)
paramecium_reset_signal (holypipette.gui.paramecium_device.ParameciumDeviceGui attribute)
(holypipette.gui.paramecium_droplet.ParameciumDropletGui attribute)
ParameciumDeviceConfig (class in holypipette.interface.paramecium_device)
ParameciumDeviceController (class in holypipette.controller.paramecium_device)
ParameciumDeviceGui (class in holypipette.gui.paramecium_device)
(class in holypipette.gui.paramecium_device2)
ParameciumDeviceInterface (class in holypipette.interface.paramecium_device)
ParameciumDeviceSimplifiedInterface (class in holypipette.interface.paramecium_device)
ParameciumDropletConfig (class in holypipette.interface.paramecium_droplet)
ParameciumDropletController (class in holypipette.controller.paramecium_droplet)
ParameciumDropletGui (class in holypipette.gui.paramecium_droplet)
ParameciumDropletInterface (class in holypipette.interface.paramecium_droplet)
ParameciumTracker (class in holypipette.vision.paramecium_tracking)
partial_withdraw() (holypipette.controller.paramecium_device.ParameciumDeviceController method)
(holypipette.interface.paramecium_device.ParameciumDeviceInterface method)
(holypipette.interface.paramecium_device.ParameciumDeviceSimplifiedInterface method)
patch() (holypipette.controller.patch.AutoPatcher method)
patch_command_signal (holypipette.gui.patch.PatchGui attribute)
patch_reset_signal (holypipette.gui.patch.PatchGui attribute)
patch_with_move() (holypipette.interface.patch.AutoPatchInterface method)
patch_without_move() (holypipette.interface.patch.AutoPatchInterface method)
PatchConfig (class in holypipette.interface.patch)
PatchGui (class in holypipette.gui.patch)
pause_between_steps (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
phase_cross_correlation() (in module holypipette.vision.phase_cross_correlation)
pipette_cardinal() (in module holypipette.vision.findpipette)
pipette_cardinal2() (in module holypipette.vision.findpipette)
pipette_command_signal (holypipette.gui.manipulator.ManipulatorGui attribute)
pipette_contact_detection() (holypipette.interface.camera.CameraInterface method)
pipette_distance (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
pipette_reset_signal (holypipette.gui.manipulator.ManipulatorGui attribute)
PipetteInterface (class in holypipette.interface.pipettes)
pixel_per_um() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
Plane (class in holypipette.geometry.planes)
position() (holypipette.devices.manipulator.fakemanipulator.FakeManipulator method)
(holypipette.devices.manipulator.leica.Leica method)
(holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.devices.manipulator.proscan.Prior method)
position2() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
position_group() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.proscan.Prior method)
prefix_edited() (holypipette.gui.camera.RecordingDialog method)
pressure_near (holypipette.interface.patch.PatchConfig attribute)
pressure_ramp_duration (holypipette.interface.patch.PatchConfig attribute)
pressure_ramp_increment (holypipette.interface.patch.PatchConfig attribute)
pressure_ramp_max (holypipette.interface.patch.PatchConfig attribute)
pressure_sealing (holypipette.interface.patch.PatchConfig attribute)
PressureController (class in holypipette.devices.pressurecontroller.pressurecontroller)
Prior (class in holypipette.devices.manipulator.proscan)
project() (holypipette.geometry.planes.Plane method)
R
ramp() (holypipette.devices.pressurecontroller.pressurecontroller.PressureController method)
recalibrate() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
recalibrate_manipulator() (holypipette.interface.pipettes.PipetteInterface method)
recalibrate_manipulator_on_click() (holypipette.interface.pipettes.PipetteInterface method)
RecordingDialog (class in holypipette.gui.camera)
recover_state() (holypipette.controller.base.TaskController method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
reference_move() (holypipette.devices.manipulator.calibratedunit.CalibratedStage method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
reference_move_not_X() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
reference_move_not_Z() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
reference_position() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
reference_relative_move() (holypipette.devices.manipulator.calibratedunit.CalibratedStage method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
refine() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
register_commands() (holypipette.gui.camera.CameraGui method)
(holypipette.gui.manipulator.ManipulatorGui method)
(holypipette.gui.paramecium_device.ParameciumDeviceGui method)
(holypipette.gui.paramecium_device2.ParameciumDeviceGui method)
(holypipette.gui.paramecium_droplet.ParameciumDropletGui method)
(holypipette.gui.patch.PatchGui method)
(holypipette.gui.patch.TrackingPatchGui method)
register_custom_action() (holypipette.gui.camera.KeyboardHelpWindow method)
register_key_action() (holypipette.gui.camera.CameraGui method)
(holypipette.gui.camera.KeyboardHelpWindow method)
register_mouse_action() (holypipette.gui.camera.CameraGui method)
(holypipette.gui.camera.KeyboardHelpWindow method)
relative_move() (holypipette.devices.manipulator.leica.Leica method)
(holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.devices.manipulator.proscan.Prior method)
relative_move_group() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
release() (holypipette.utils.filelock.BaseFileLock method)
RequestedAbortException
reset_ranges() (holypipette.interface.pipettes.PipetteInterface method)
reset_requested() (holypipette.interface.base.TaskInterface method)
reset_timer() (holypipette.interface.pipettes.PipetteInterface method)
resistance() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
resistance_meter_state() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
resizeEvent() (holypipette.gui.camera.ElidedLabel method)
rowCount() (holypipette.gui.camera.Logger method)
S
safe_move() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
save_config() (holypipette.gui.camera.ConfigGui method)
save_configuration() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.interface.pipettes.PipetteInterface method)
save_image() (holypipette.interface.camera.CameraInterface method)
save_log() (holypipette.gui.camera.LogViewerWindow method)
save_state() (holypipette.controller.base.TaskController method)
(holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
save_to_file() (holypipette.gui.camera.Logger method)
seal_deadline (holypipette.interface.patch.PatchConfig attribute)
seal_min_time (holypipette.interface.patch.PatchConfig attribute)
select_amplifier() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
select_folder() (holypipette.gui.camera.RecordingDialog method)
selected_device (holypipette.devices.amplifier.multiclamp.MultiClampChannel attribute)
send_command() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
sequential_patching() (holypipette.controller.patch.AutoPatcher method)
(holypipette.interface.patch.AutoPatchInterface method)
SerialDevice (class in holypipette.devices.serialdevice)
set_boolean_value() (holypipette.gui.camera.ConfigGui method)
set_bridge_balance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_fast_compensation_capacitance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_fast_speed() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
set_floor() (holypipette.interface.pipettes.PipetteInterface method)
set_holding() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_home_direction() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
set_home_velocity() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
set_level() (holypipette.gui.camera.LogViewerWindow method)
set_numerical_value() (holypipette.gui.camera.ConfigGui method)
set_numerical_value_with_unit() (holypipette.gui.camera.ConfigGui method)
set_pressure() (holypipette.devices.pressurecontroller.ob1.OB1 method)
(holypipette.devices.pressurecontroller.pressurecontroller.FakePressureController method)
(holypipette.devices.pressurecontroller.pressurecontroller.PressureController method)
set_primary_signal() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_primary_signal_gain() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_primary_signal_hpf() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_primary_signal_lpf() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_pulses_amplitude() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_pulses_frequency() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_ramp_length() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
set_secondary_signal() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_secondary_signal_gain() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_secondary_signal_lpf() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_single_step_distance() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
set_single_step_factor_trackball() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
set_single_step_velocity() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
set_slow_compensation_capacitance() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
set_slow_speed() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
set_status_message() (holypipette.gui.camera.CameraGui method)
set_to_zero_second_counter() (holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
set_zap_duration() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
short_withdraw_distance (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
show_paramecium() (holypipette.gui.paramecium_droplet.ParameciumDropletGui method)
show_tip() (holypipette.gui.manipulator.ManipulatorGui method)
show_tip_switch() (holypipette.gui.manipulator.ManipulatorGui method)
show_tracked_objects() (holypipette.interface.camera.CameraInterface method)
show_tracked_paramecium() (holypipette.interface.camera.CameraInterface method)
signal_updated_exposure() (holypipette.interface.camera.CameraInterface method)
signed_distance() (holypipette.geometry.planes.Plane method)
single_step() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
single_step_trackball() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
skip_edited() (holypipette.gui.camera.RecordingDialog method)
sleep() (holypipette.controller.base.TaskController method)
slow_speed() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
SoftFileLock (class in holypipette.utils.filelock)
splitter_size_changed() (holypipette.gui.camera.CameraGui method)
stack() (holypipette.devices.manipulator.microscope.Microscope method)
start_patch() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
start_task() (holypipette.gui.camera.CameraGui method)
start_tracking() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
status_message_updated() (holypipette.gui.camera.CameraGui method)
step_move() (holypipette.devices.manipulator.leica.Leica method)
(holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.microscope.Microscope method)
stop() (holypipette.devices.manipulator.leica.Leica method)
(holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.devices.manipulator.proscan.Prior method)
stop_all() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
stop_amplitude (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
stop_duration (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
stop_patch() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
store_cleaning_position() (holypipette.interface.patch.AutoPatchInterface method)
store_rinsing_position() (holypipette.interface.patch.AutoPatchInterface method)
switch_holding() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
switch_manipulator() (holypipette.interface.pipettes.PipetteInterface method)
switch_pulses() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
switch_resistance_meter() (holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
T
take_photos() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
target_pixelperum (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
task_finished (holypipette.interface.base.TaskInterface attribute)
task_finished() (holypipette.gui.camera.CameraGui method)
TaskController (class in holypipette.controller.base)
TaskInterface (class in holypipette.interface.base)
templatematching() (in module holypipette.vision.templatematching)
Timeout
timeout (holypipette.utils.filelock.BaseFileLock property)
to_dict() (holypipette.config.Config method)
to_file() (holypipette.config.Config method)
toggle_configuration_display() (holypipette.gui.camera.CameraGui method)
toggle_following() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
toggle_help() (holypipette.gui.camera.CameraGui method)
toggle_log() (holypipette.gui.camera.CameraGui method)
toggle_overlay() (holypipette.gui.camera.CameraGui method)
toggle_recording() (holypipette.gui.camera.CameraGui method)
toggle_tracking() (holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
track_object() (holypipette.interface.camera.CameraInterface method)
track_paramecium() (holypipette.gui.paramecium_droplet.ParameciumDropletGui method)
(holypipette.interface.paramecium_droplet.ParameciumDropletInterface method)
TrackingPatchGui (class in holypipette.gui.patch)
U
unit (holypipette.config.NumberWithUnit attribute)
UnixFileLock (class in holypipette.utils.filelock)
up_direction() (in module holypipette.vision.findpipette)
update_image() (holypipette.gui.livefeed.LiveFeedQt method)
update_text() (holypipette.gui.camera.KeyboardHelpWindow method)
updated_exposure (holypipette.interface.camera.CameraInterface attribute)
V
value_changed() (holypipette.gui.camera.ConfigGui method)
value_changed_signal (holypipette.gui.camera.ConfigGui attribute)
video_mouse_press() (holypipette.gui.camera.CameraGui method)
voltage_clamp() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
Vramp_amplitude (holypipette.interface.patch.PatchConfig attribute)
Vramp_duration (holypipette.interface.patch.PatchConfig attribute)
W
wait_until_reached() (holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
wait_until_still() (holypipette.devices.manipulator.leica.Leica method)
(holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
(holypipette.devices.manipulator.manipulator.Manipulator method)
(holypipette.devices.manipulator.manipulatorunit.ManipulatorUnit method)
(holypipette.devices.manipulator.microscope.Microscope method)
(holypipette.devices.manipulator.proscan.Prior method)
warn() (holypipette.log_utils.LoggingObject method)
where_is_droplet() (in module holypipette.vision.paramecium_tracking)
where_is_paramecium2() (in module holypipette.vision.paramecium_tracking)
WindowsFileLock (class in holypipette.utils.filelock)
withdraw() (holypipette.devices.manipulator.calibratedunit.CalibratedUnit method)
withdraw_distance (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
working_distance (holypipette.interface.paramecium_droplet.ParameciumDropletConfig attribute)
working_level (holypipette.interface.paramecium_device.ParameciumDeviceConfig attribute)
Z
zap (holypipette.interface.patch.PatchConfig attribute)
zap() (holypipette.devices.amplifier.amplifier.Amplifier method)
(holypipette.devices.amplifier.amplifier.FakeAmplifier method)
(holypipette.devices.amplifier.multiclamp.MultiClampChannel method)
zero() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
(holypipette.devices.manipulator.luigsneumann_SM5.LuigsNeumann_SM5 method)
zero2() (holypipette.devices.manipulator.luigsneumann_SM10.LuigsNeumann_SM10 method)
Read the Docs
v: latest
Versions
latest
stable
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds